Interactive web portals for transcriptomics & proteomics datasets
Hamidzada et al. (2024) Nature Cardiovascular Research
1) Proteomics of human cardiac microtissues with or without hESC-macrophages
2) Proteomics of human cardiac microtissues with or without efferocytosis inhibition
3) Bulk RNA-seq of sorted hESC-macrophages from human cardiac microtissues
Manuscript: DOI: 10.1038/s44161-024-00471-7
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Type of data: Proteomics (LC-MS) & bulk RNA-seq
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Interactive datasets:
1) https://svohra.shinyapps.io/Proteomics_ControlvsMF/
2) https://svohra.shinyapps.io/Proteomics_Annexin/
3) https://svohra.shinyapps.io/MFs_sorted_from_Biowires/
Dick, Wong, Hamidzada, Nejat et al. (2022) Science Immunology
Heart Heart, 5-month-old & 12-year-old: Immune cells
Manuscript: DOI: 10.1126/sciimmunol.abf7777
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Type of data: Single-cell RNA sequencing
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Interactive dataset: https://svohra.shinyapps.io/Human_Cardiac_Immune_Cells
Zaman et al. (2021) Immunity
1) Mouse Heart, Hypertension: Resident Macrophages/Monocytes
2) Human Heart, 5-month-old & Adult Heart Failure: Immune cells
Manuscript:​ DOI: https://doi.org/10.1016/j.immuni.2021.07.006
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Type of data: Single-cell RNA sequencing
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Interactive datasets:
1) https://svohra.shinyapps.io/Hypertension/
2) https://svohra.shinyapps.io/Human_Neonatal_and_Heart_Failure/
Dick, Macklin, Nejat et al. (2019) Nature Immunology
Mouse Heart, Myocardial Infarction
Macrophages/Monocytes
Manuscript: DOI: 10.1038/s41590-018-0272-2
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Type of data: Single-cell RNA sequencing
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Interactive dataset: https://svohra.shinyapps.io/postMI/
Bajpai et al. (2018) Nature Medicine
Human heart, ICM, DCM
Macrophages/Monocytes
Manuscript: DOI: https://doi.org/10.1038/s41591-018-0059-x
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Type of data: Microarray
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Interactive dataset: https://svohra.shinyapps.io/human_array_data/
Epelman et al. (2014) Immunity
Mouse heart, Steady State
Macrophages/Monocytes
Manuscript: DOI: https://doi.org/10.1016/j.immuni.2013.11.019
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Type of data: Microarray
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Interactive dataset: https://svohra.shinyapps.io/mouse_array_data/